Senior/Principal Data Engineer

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Company Summary

 FL69 Inc. is a privately held, early-stage biotechnology company with the vision to revolutionize the human therapeutic landscape. FL69 Inc. was founded by Flagship Pioneering, a team of entrepreneurial scientists that conceives, creates, resources, and grows first-in-category life sciences companies. Since 2000, Flagship has created nearly 100 scientific ventures that are pioneering novel and proprietary biological, industrial, and engineering approaches to solve major needs in human health and sustainability. These companies include Moderna Therapeutics (NASDAQ:MRNA), Seres Therapeutics (MCRB), Syros Pharmaceuticals (SYRS), Rubius Therapeutics (RUBY), Evelo Biosciences (EVLO), Kaleido Biosciences (KLDO), and Indigo Agriculture. FL69 Inc. is a highly dynamic, entrepreneurial, and innovation-driven organization seeking to hire an exceptional scientist to join our team.

Overview

We are seeking a dynamic, collaborative, and creative Senior/Principal Data Engineer to build FL69’s nascent data platform. As part of FL69’s Computational Biology team, s/he will develop cloud-based solutions to advance FL69’s strategic and scientific goals by ensuring that the data that drives FL69’s growth is Findable, Accessible, Interoperable, and Reusable.

Key Responsibilities

  • Work with computational and wet-lab scientists to develop and implement a comprehensive, scalable data strategy for FL69
  • Collaborate with computational and wet-lab scientists to model and integrate data generated by FL69 and third parties
  • Work with computational scientists to develop and optimize analysis pipelines
  • Establish and manage cloud-based databases used by computational scientists
  • Develop and manage infrastructure for cloud-based high-performance computing
  • Ingest and manage public data sources
  • Coordinate transfer of data to/from CROs and other outside collaborators
  • Work with wet-lab scientists to manage instrument data and data in electronic lab notebooks
  • Support development of data delivery/data visualization applications
  • Manage and administer FL69’s AWS environment

Minimum Qualifications

  • Master’s degree in Bioinformatics, Informatics, Computer Science, Data Science or other related discipline
  • 4-6+ years experience in data engineering/research informatics in the life sciences
  • Demonstrated proficiency with cloud development (AWS strongly preferred) using infrastructure-as-code frameworks
  • Proficiency in designing, managing, and versioning cloud-based databases
  • Experience integrating multi-omic datasets
  • Experience with data management and pipeline support for NGS and/or proteomics
  • Experience building processes supporting data transformation, data structures, metadata, dependency and workload management
  • Strong DevOps, project management and organization skills
  • Strong technical communication skills

Preferred Qualifications

  • Experience with workflow orchestration software (Nextflow, SnakeMake, etc) and deploying it in cloud environments such as AWS Batch
  • Experience with ELN/LIMS (Benchling preferred)
  • Experience supporting and working with cross-functional teams in a fast-paced environment
  • Experience with metadata management including controlled vocabulary/ontology utilization
 
 
Flagship Pioneering and our ecosystem companies are committed to equal employment opportunity regardless of race, color, ancestry, religion, sex, national origin, sexual orientation, age, citizenship, marital status, disability, gender identity or Veteran status.
 
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